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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
38
DNase-seq
20
ATAC-seq
Assay category
71
DNA binding
58
DNA accessibility
Target of assay
69
histone
69
histone modification
37
broad histone mark
32
narrow histone mark
2
transcription factor
1
RNA binding protein
Date released
45
June, 2019
31
November, 2019
19
August, 2017
14
October, 2018
7
May, 2019
7
October, 2019
3
March, 2020
3
May, 2021
Available data
746
bam
691
bigWig
fastq
426
tsv
274
bed narrowPeak
138
bigBed narrowPeak
80
zippedFastqFolder
67
bed broadPeak
63
bed bed3+
40
bigBed broadPeak
34
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
9
bedpe bed3+
9
hic
7
txt
3
cool
1
bedpe
1
hdf5
Organism
129
Homo sapiens
Biosample type
97
tissue
21
cell line
9
primary cell
2
in vitro differentiated cells
Organ
191
heart
189
brain
183
kidney
129
vasculature
127
blood vessel
92
limb
74
artery
74
epithelium
73
liver
69
pancreas
60
musculature of body
33
eye
27
nerve
23
connective tissue
18
ureter
13
vein
8
bone element
8
skeleton
4
adipose tissue
1
pituitary gland
Project
125
AMP
4
T1D
Genome assembly (visualization)
127
hg19
109
GRCh38
Lab
129
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
assay_title!
Capture-C
files.file_type!
fastq
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
islet of Langerhans
8
19
muscle of leg
6
13
muscle of arm
17
endocrine pancreas
14
skeletal muscle tissue
13
+ See 4 more…
cell line
EndoC_BH1
13
1
Panc1
6
1
primary cell
skeletal muscle satellite cell
7
skeletal muscle cell
1
1
in vitro differentiated cells
pancreatic PP cell
2
See all biosamples
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