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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
pCHi-C
1
Hi-C
Assay category
1
3D chromatin structure
Date released
2
March, 2020
1
August, 2018
1
August, 2021
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
tissue
Organ
1
adipose tissue
1
connective tissue
1
pancreas
Project
4
AMP
Genome assembly (visualization)
2
hg19
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
Capture-C
files.file_type!
hic
BIOSAMPLE
ASSAY
4 results
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pCHi-C
Hi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
white fat cell
1
tissue
islet of Langerhans
1
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