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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
45
total RNA-seq
25
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
134
DNA binding
47
Transcription
26
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
39
broad histone mark
37
narrow histone mark
33
transcription factor
24
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
68
August, 2017
43
December, 2017
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
169
bam
148
bigWig
141
fastq
102
bed narrowPeak
45
tsv
23
bed bed3+
17
bigBed narrowPeak
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
220
Homo sapiens
Biosample type
2508
tissue
878
primary cell
597
cell line
220
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
220
AMP
Genome assembly (visualization)
175
hg19
151
GRCh38
4
hg18
Lab
217
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
47
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
Capture-C
month_released!
May, 2021
August, 2021
BIOSAMPLE
ASSAY
220 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
definitive endodermal cell
8
2
1
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