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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
158
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
275
DNA accessibility
158
DNA binding
57
DNA methylation
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
27
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
460
bam
438
bigWig
409
fastq
218
tsv
168
bed narrowPeak
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
872
Homo sapiens
Biosample type
2721
tissue
872
primary cell
635
cell line
256
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
343
pancreas
37
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
498
AMP
321
HPAP
53
T1D
Genome assembly (visualization)
435
hg19
386
GRCh38
Lab
498
AMP-T2D consortium
321
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
Audit category:
53
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
Capture-C
month_released!
May, 2021
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
872 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
52
35
12
13
31
Langerhans cell
85
48
pancreatic beta cell
21
23
12
13
16
exocrine cell
39
pancreatic acinar cell
4
9
12
8
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