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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
single cell RNA-seq
165
ATAC-seq
101
ChIP-seq
56
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
381
Transcription
223
DNA accessibility
101
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
72
histone
72
histone modification
37
narrow histone mark
35
broad histone mark
32
control
Date released
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
31
July, 2019
21
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
460
bam
442
bigWig
409
fastq
218
tsv
168
bed narrowPeak
153
zippedFastqFolder
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
773
Homo sapiens
Biosample type
2176
tissue
773
primary cell
284
cell line
243
in vitro differentiated cells
10
stem cell
Organ
345
epithelium
324
pancreas
23
connective tissue
20
kidney
16
vasculature
14
blood vessel
12
liver
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
395
AMP
324
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
342
hg19
282
GRCh38
Lab
395
AMP-T2D consortium
324
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
30
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
Capture-C
month_released!
May, 2021
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
773 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
Hi-C
RRBS
DNase-seq
small RNA-seq
pCHi-C
primary cell
pancreatic alpha cell
52
12
29
13
31
1
Langerhans cell
85
48
pancreatic beta cell
21
12
16
13
16
1
exocrine cell
39
pancreatic acinar cell
4
12
4
8
1
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