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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
113
single cell RNA-seq
111
total RNA-seq
88
ChIP-seq
56
snATAC-seq
31
DNase-seq
10
RRBS
7
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
226
Transcription
204
DNA accessibility
88
DNA binding
10
DNA methylation
7
3D chromatin structure
Target of assay
61
histone
61
histone modification
32
narrow histone mark
29
broad histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
31
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
266
bam
250
bigWig
151
fastq
110
tsv
100
bed narrowPeak
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
536
Homo sapiens
Biosample type
2269
tissue
570
cell line
536
primary cell
260
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
310
AMP
172
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
259
hg19
195
GRCh38
Lab
310
AMP-T2D consortium
172
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
Capture-C
month_released!
May, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
536 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
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