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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
29
ATAC-seq
18
snATAC-seq
Assay category
56
Transcription
47
DNA accessibility
Date released
May, 2021
45
May, 2020
24
May, 2022
18
February, 2023
16
January, 2021
Available data
69
bam
45
bigWig
45
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
103
Homo sapiens
Biosample type
53
primary cell
50
tissue
cell line
Organ
50
pancreas
8
blood
8
bodily fluid
Project
79
T1D
24
AMP
Genome assembly (visualization)
63
hg19
45
GRCh38
Lab
3154
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
103
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
assay_title!
Capture-C
month_released!
May, 2021
biosample_type!
cell line
BIOSAMPLE
ASSAY
103 results
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total RNA-seq
ATAC-seq
snATAC-seq
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
tissue
islet of Langerhans
11
29
6
pancreas
4
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