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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1629
ChIP-seq
1497
total RNA-seq
509
ATAC-seq
369
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
4
DNA accessibility
Date released
17
July, 2019
7
August, 2017
1
November, 2018
October, 2019
Available data
19
bed bedMethyl
19
bigBed bedMethyl
6
fastq
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
Organism
25
Homo sapiens
Biosample type
15
tissue
10
primary cell
Organ
6
epithelium
5
kidney
5
musculature of body
4
pancreas
3
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
25
AMP
Genome assembly (visualization)
23
hg19
Lab
25
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
Capture-C
month_released!
October, 2019
BIOSAMPLE
ASSAY
25 results
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RRBS
FAIRE-seq
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
kidney
1
1
pancreas
1
1
brain
1
+ See 4 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
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