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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
9
ChIP-seq
8
ATAC-seq
3
Hi-C
2
DNase-seq
Assay category
54
Transcription
10
DNA accessibility
9
DNA binding
3
3D chromatin structure
Target of assay
5
transcription factor
3
control
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
66
February, 2021
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
73
bam
65
bigWig
54
tsv
16
bed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
3
fastq
2
hdf5
1
bedpe bed3+
1
hic
Organism
76
Homo sapiens
Biosample type
tissue
66
cell line
10
primary cell
Organ
472
epithelium
429
liver
424
pancreas
133
connective tissue
82
vasculature
80
heart
76
blood vessel
69
blood
69
bodily fluid
68
artery
37
embryo
29
kidney
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
1
vein
Project
76
AMP
Genome assembly (visualization)
73
hg19
70
GRCh38
Lab
76
AMP-T2D consortium
assay_title!
Capture-C
month_released!
October, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
kidney capillary endothelial cell
1
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