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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
Assay category
216
DNA binding
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
38
August, 2017
32
September, 2018
October, 2019
19
June, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
212
bigWig
200
bed narrowPeak
182
bam
98
tagAlign
73
fastq
37
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
bed bed3+
Organism
216
Homo sapiens
Biosample type
460
tissue
216
primary cell
112
in vitro differentiated cells
31
cell line
2
stem cell
Organ
58
pancreas
45
epithelium
8
connective tissue
8
musculature of body
4
kidney
3
brain
3
liver
2
heart
2
vasculature
1
blood vessel
1
eye
Project
132
AMP
84
T1D
Genome assembly (visualization)
212
hg19
182
GRCh38
Lab
114
Kyle Gaulton, UCSD
102
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
Capture-C
month_released!
October, 2019
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
pancreatic ductal cell
13
skeletal muscle myoblast
12
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