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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
84
ChIP-seq
17
pCHi-C
11
ATAC-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
101
Transcription
84
DNA binding
21
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
45
May, 2020
23
February, 2023
8
January, 2021
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
Organism
228
Homo sapiens
Biosample type
196
primary cell
27
tissue
5
cell line
Organ
26
pancreas
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
386
AMP
324
HPAP
228
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
228
Kyle Gaulton, UCSD
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
Capture-C
organ_slims!
blood
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
5
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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