Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
59
total RNA-seq
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
65
Transcription
5
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
58
February, 2021
50
May, 2019
25
October, 2019
6
August, 2021
5
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
142
bam
123
bigWig
66
bed narrowPeak
66
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
153
Homo sapiens
Biosample type
95
tissue
58
cell line
primary cell
Organ
755
liver
620
connective tissue
517
pancreas
483
adipose tissue
333
heart
261
brain
243
kidney
153
blood vessel
153
vasculature
146
bone element
114
limb
94
artery
85
epithelium
81
musculature of body
60
blood
60
bodily fluid
42
nerve
37
embryo
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
123
GRCh38
123
hg19
Lab
153
AMP-T2D consortium
assay_title!
Capture-C
ATAC-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
153 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
coronary artery
5
1
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
See all biosamples
Download