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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
17
ChIP-seq
8
ATAC-seq
4
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
17
DNA binding
13
DNA accessibility
4
3D chromatin structure
Target of assay
16
histone
16
histone modification
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
12
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
84
bam
73
bigWig
54
tsv
24
bed narrowPeak
12
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
3
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
88
Homo sapiens
Biosample type
tissue
66
cell line
22
primary cell
Organ
463
epithelium
413
liver
402
pancreas
111
connective tissue
94
vasculature
88
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
50
kidney
33
embryo
21
brain
13
vein
10
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
88
AMP
Genome assembly (visualization)
82
hg19
77
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
Capture-C
target.investigated_as!
broad histone mark
biosample_type!
tissue
BIOSAMPLE
ASSAY
88 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
8
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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