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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
397
Transcription
2
DNA accessibility
Date released
120
July, 2018
90
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
6
May, 2022
5
March, 2020
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
1
November, 2018
Available data
332
bam
326
bigWig
326
tsv
180
fastq
6
txt
2
bed narrowPeak
2
bigBed narrowPeak
Organism
399
Homo sapiens
Biosample type
285
tissue
81
primary cell
33
cell line
Organ
474
connective tissue
399
pancreas
398
adipose tissue
189
liver
132
epithelium
72
heart
62
blood vessel
62
bone element
62
vasculature
61
kidney
56
artery
19
eye
18
brain
14
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
1
vein
Project
337
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
326
hg19
324
GRCh38
Lab
333
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
assay_title!
DNAme array
BIOSAMPLE
ASSAY
399 results
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Clear Filters
total RNA-seq
FAIRE-seq
tissue
islet of Langerhans
278
1
body of pancreas
3
pancreas
2
1
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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