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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
41
WGBS
16
total RNA-seq
3
Hi-C
Assay category
101
Transcription
97
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
February, 2023
59
September, 2020
39
February, 2021
7
August, 2020
3
October, 2022
Available data
153
zippedFastqFolder
93
fastq
10
bigWig
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
242
Homo sapiens
Biosample type
242
primary cell
Organ
109
epithelium
109
pancreas
Project
2705
AMP
242
HPAP
123
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
242
Klaus Kaestner, Upenn
Audit category:
30
audit script error
assay_title!
DNAme array
month_released!
February, 2023
files.file_type!
tsv
BIOSAMPLE
ASSAY
242 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
total RNA-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
25
15
1
pancreatic beta cell
16
16
1
1
pancreatic acinar cell
4
1
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