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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
Assay category
53
DNA binding
Target of assay
105
histone
105
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
16
August, 2017
12
December, 2017
11
May, 2021
7
August, 2021
7
February, 2018
Available data
39
bam
38
bed narrowPeak
38
bigWig
31
fastq
12
tagAlign
5
bigBed narrowPeak
4
bed bed3+
Organism
53
Homo sapiens
Biosample type
321
tissue
110
primary cell
53
in vitro differentiated cells
14
cell line
Organ
16
connective tissue
7
embryo
7
epithelium
5
liver
1
pancreas
Project
53
AMP
Genome assembly (visualization)
38
GRCh38
38
hg19
Lab
43
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
assay_title!
DNAme array
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
primitive gut cell
2
Hepatic endoderm
1
Posterior foregut
1
definitive endodermal cell
1
endocrine cell
1
pancreatic PP cell
1
posterior foregut
1
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