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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
9
DNase-seq
5
ATAC-seq
3
WGBS
3
single cell RNA-seq
1
pCHi-C
Assay category
99
DNA binding
14
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
40
transcription factor
34
histone
34
histone modification
25
control
17
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
72
August, 2017
23
October, 2018
15
June, 2019
3
October, 2019
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
November, 2020
1
October, 2017
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
120
Homo sapiens
Biosample type
57
in vitro differentiated cells
45
tissue
18
primary cell
Organ
497
pancreas
467
liver
293
epithelium
134
brain
120
connective tissue
104
kidney
94
heart
85
vasculature
84
limb
80
blood vessel
60
blood
60
bodily fluid
49
musculature of body
46
adipose tissue
27
embryo
26
nerve
25
artery
24
spleen
18
ureter
13
vein
6
eye
Project
120
AMP
Genome assembly (visualization)
91
GRCh38
91
hg19
Lab
120
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
DNAme array
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
2
white fat cell
1
tissue
omental fat pad
11
2
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
1
3
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic stellate cell
3
brain pericyte
1
hepatic stellate cell
1
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