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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
373
ChIP-seq
Assay category
373
DNA binding
Target of assay
306
histone
306
histone modification
167
narrow histone mark
139
broad histone mark
63
control
4
transcription factor
Date released
87
May, 2021
78
November, 2017
69
August, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
2
February, 2021
Available data
2518
bam
2391
bigWig
1470
bed narrowPeak
1115
tsv
881
fastq
868
bigBed narrowPeak
373
tagAlign
284
bed broadPeak
261
bigBed broadPeak
231
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
14
bedpe bed3+
13
hic
12
bed bed3
8
csv
7
bed bedgraph
3
tar
2
hdf5
2
ibed
1
tagAlign bed3+
1
vcf
Organism
373
Homo sapiens
Biosample type
222
tissue
100
primary cell
37
in vitro differentiated cells
14
cell line
Organ
118
brain
86
liver
22
connective tissue
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
6
artery
6
blood vessel
6
heart
vasculature
1
pituitary gland
Project
289
AMP
84
T1D
Genome assembly (visualization)
234
GRCh38
220
hg19
Lab
289
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
assay_title!
DNAme array
organ_slims!
vasculature
pancreas
BIOSAMPLE
ASSAY
373 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 41 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
cell line
HepG2
12
iPSC derived cell line
2
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