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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
2
ATAC-seq
Assay category
5
3D chromatin structure
2
DNA accessibility
Date released
3
October, 2022
2
August, 2021
1
March, 2019
1
October, 2017
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
7
Homo sapiens
Biosample type
3
primary cell
3
tissue
1
cell line
Organ
6
pancreas
3
epithelium
1
liver
Project
4
AMP
3
HPAP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
audit script error
assay_title!
DNAme array
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
7 results
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Hi-C
ATAC-seq
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
1
2
cell line
HepG2
1
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