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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
57
total RNA-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
163
Transcription
82
DNA accessibility
DNA binding
2
3D chromatin structure
Date released
619
February, 2021
290
May, 2020
250
August, 2021
213
May, 2021
200
May, 2022
199
February, 2023
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
65
October, 2019
59
September, 2020
51
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
41
September, 2018
25
February, 2020
19
April, 2020
17
November, 2018
16
January, 2021
15
February, 2018
15
May, 2023
10
December, 2019
10
November, 2020
8
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
September, 2017
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
August, 2022
Available data
106
tsv
76
bed narrowPeak
64
xls
57
txt
17
bam
9
bigWig
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
249
Homo sapiens
Biosample type
229
tissue
cell line
21
in vitro differentiated cells
Organ
128
kidney
92
heart
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
250
AMP
Genome assembly (visualization)
81
GRCh38
22
hg19
Lab
128
Katalin Susztak, Upenn
116
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
assay_title!
DNAme array
assay_slims!
DNA binding
biosample_type!
cell line
BIOSAMPLE
ASSAY
250 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
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