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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
9
DNase-seq
7
WGBS
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
FAIRE-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
181
Transcription
DNA binding
92
DNA accessibility
7
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
707
February, 2021
291
May, 2020
276
August, 2021
233
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
123
tsv
86
bed narrowPeak
64
xls
57
txt
42
bam
34
bigWig
18
fastq
11
bed bed3+
10
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
293
Homo sapiens
Biosample type
245
tissue
27
cell line
21
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
17
liver
11
pancreas
8
embryo
6
blood vessel
6
connective tissue
6
vasculature
3
spleen
2
adipose tissue
2
artery
2
brain
2
epithelium
Project
294
AMP
Genome assembly (visualization)
105
GRCh38
41
hg19
Lab
144
AMP-T2D consortium
128
Katalin Susztak, Upenn
18
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
DNAme array
month_released!
September, 2023
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
294 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
snATAC-seq
STARR-seq
Capture-C
Hi-C
FAIRE-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 18 more…
cell line
HepG2
9
1
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
pancreatic cell
1
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