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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
59
total RNA-seq
27
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
ATAC-seq
4
Capture-C
4
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
27
DNA binding
10
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
214
August, 2021
200
May, 2022
170
February, 2023
162
August, 2017
147
February, 2021
134
May, 2020
126
November, 2017
122
May, 2021
107
October, 2019
56
September, 2020
48
March, 2020
47
September, 2023
29
July, 2019
29
October, 2018
25
February, 2020
24
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
September, 2018
Available data
108
tsv
57
txt
16
bed narrowPeak
16
bigWig
9
bam
8
tagAlign
3
hic
2
bed bed3+
2
bedpe bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
216
Homo sapiens
Biosample type
168
tissue
36
cell line
12
in vitro differentiated cells
1
primary cell
Organ
92
heart
66
kidney
32
liver
7
pancreas
6
blood vessel
6
vasculature
5
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
217
AMP
Genome assembly (visualization)
GRCh38
63
hg19
Lab
110
AMP-T2D consortium
64
Katalin Susztak, Upenn
37
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
inconsistent ontology term
assay_title!
DNAme array
assembly!
GRCh38
BIOSAMPLE
ASSAY
217 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
ATAC-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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