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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
97
total RNA-seq
24
ATAC-seq
13
single cell RNA-seq
4
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
110
Transcription
100
DNA binding
29
DNA accessibility
4
DNA methylation
Target of assay
65
histone
65
histone modification
36
broad histone mark
29
narrow histone mark
18
control
17
transcription factor
8
RNA binding protein
Date released
139
August, 2017
35
October, 2018
24
May, 2022
11
September, 2018
8
July, 2018
7
April, 2018
7
November, 2018
6
September, 2017
5
October, 2017
1
March, 2019
Available data
474
bam
412
bigWig
283
tsv
243
fastq
141
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
236
Homo sapiens
Biosample type
213
tissue
30
primary cell
Organ
471
pancreas
465
liver
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
243
AMP
Genome assembly (visualization)
216
hg19
200
GRCh38
Lab
217
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
DNAme array
organ_slims!
epithelium
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
28
97
20
6
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
3
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
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