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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
9
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
60
bigWig
52
bed narrowPeak
48
bam
45
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
81
Homo sapiens
Biosample type
75
tissue
6
primary cell
Organ
857
pancreas
786
liver
664
connective tissue
490
adipose tissue
426
epithelium
384
heart
330
kidney
280
brain
230
vasculature
225
blood vessel
141
artery
117
limb
81
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
81
AMP
Genome assembly (visualization)
63
hg19
45
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
assay_title!
DNAme array
audit.ERROR.category!
inconsistent ontology term
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
12
7
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle cell
1
2
1
skeletal muscle satellite cell
1
1
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