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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
ChIP-seq
300
total RNA-seq
66
ATAC-seq
34
DNase-seq
11
snATAC-seq
6
single cell RNA-seq
6
small RNA-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
3
FAIRE-seq
3
RRBS
3
pCHi-C
Assay category
326
DNA binding
312
Transcription
114
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
257
histone
257
histone modification
146
narrow histone mark
111
broad histone mark
54
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
89
October, 2019
82
November, 2017
51
October, 2018
39
November, 2019
37
May, 2021
30
May, 2019
29
June, 2019
24
May, 2022
21
October, 2017
19
February, 2023
17
July, 2019
13
February, 2020
11
March, 2020
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
August, 2021
1
August, 2022
Available data
655
bam
575
bigWig
315
bed narrowPeak
298
tsv
225
fastq
178
bigBed narrowPeak
134
tagAlign
56
bed broadPeak
54
bed bed3+
33
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
763
Homo sapiens
Biosample type
770
tissue
367
primary cell
92
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
740
AMP
30
T1D
Genome assembly (visualization)
589
GRCh38
556
hg19
Lab
707
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
DNAme array
BIOSAMPLE
ASSAY
770 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
snATAC-seq
single cell RNA-seq
small RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
50
278
59
1
7
6
3
4
1
1
body of pancreas
35
3
4
4
2
2
brain
20
1
1
14
1
pancreas
16
2
2
4
1
2
1
1
1
layer of hippocampus
23
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