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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
60
total RNA-seq
47
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
80
DNA binding
66
Transcription
53
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
55
histone
55
histone modification
36
broad histone mark
19
narrow histone mark
18
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
28
October, 2019
8
July, 2019
6
August, 2021
4
June, 2019
3
February, 2020
3
March, 2020
Available data
156
bam
129
bigWig
114
bed narrowPeak
67
tsv
63
bigBed narrowPeak
7
tagAlign
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
203
Homo sapiens
Biosample type
135
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
203
AMP
Genome assembly (visualization)
172
GRCh38
137
hg19
Lab
203
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
DNAme array
organ_slims!
epithelium
BIOSAMPLE
ASSAY
203 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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