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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
13
ChIP-seq
6
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
35
DNA accessibility
19
Transcription
13
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
34
October, 2019
31
February, 2023
6
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
40
bed narrowPeak
20
bam
15
bigWig
13
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
74
Homo sapiens
Biosample type
54
tissue
20
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
45
hg19
12
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNAme array
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
11
2
2
1
retinal pigment epithelial cell
2
1
1
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