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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
39
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
26
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
29
bigWig
27
bed narrowPeak
18
bam
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
tsv
1
txt
Organism
54
Homo sapiens
Biosample type
43
tissue
11
primary cell
Organ
592
liver
459
pancreas
304
epithelium
230
brain
194
connective tissue
158
vasculature
157
heart
154
blood vessel
148
kidney
97
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
20
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
34
hg19
14
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_title!
DNase-seq
assay_slims!
Transcription
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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