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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ATAC-seq
DNase-seq
8
snATAC-seq
5
FAIRE-seq
Assay category
1743
DNA binding
1576
Transcription
484
DNA accessibility
50
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2020
92
February, 2023
82
August, 2021
39
May, 2022
34
May, 2021
26
November, 2019
23
October, 2019
22
February, 2021
14
September, 2018
11
May, 2023
8
July, 2019
8
October, 2017
6
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
1
August, 2022
1
November, 2018
1
November, 2020
Available data
283
bed narrowPeak
180
bam
131
bigWig
64
xls
53
fastq
32
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
5
bed bed3+
4
txt
2
bed broadPeak
1
tar
Organism
484
Homo sapiens
Biosample type
261
tissue
152
primary cell
42
in vitro differentiated cells
29
cell line
Organ
95
pancreas
82
kidney
55
epithelium
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
5
brain
2
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Project
484
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
267
hg19
224
GRCh38
Lab
350
AMP-T2D consortium
81
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
2
audit script error
1
inconsistent replicate
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
484 results
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Clear Filters
ATAC-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
57
1
1
coronary artery
36
liver
20
retina
15
+ See 31 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 35 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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