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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
1
February, 2023
Available data
211
bam
190
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
24
tsv
19
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
236
tissue
16
primary cell
Organ
937
pancreas
782
liver
670
connective tissue
505
epithelium
487
adipose tissue
320
heart
271
kidney
252
brain
224
vasculature
220
blood vessel
158
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
53
eye
41
nerve
37
embryo
23
spleen
20
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
252
AMP
Genome assembly (visualization)
185
GRCh38
142
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
DNase-seq
pCHi-C
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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