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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
286
Transcription
47
DNA methylation
Date released
81
February, 2023
67
May, 2022
59
August, 2021
59
May, 2021
45
May, 2020
16
September, 2020
6
February, 2021
Available data
112
tsv
104
fastq
102
bam
98
bigWig
55
txt
41
zippedFastqFolder
2
bed bed3+
Organism
333
Homo sapiens
Biosample type
237
primary cell
82
tissue
9
cell line
5
in vitro differentiated cells
Organ
113
pancreas
100
epithelium
49
kidney
29
liver
Project
139
HPAP
101
T1D
93
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
139
Klaus Kaestner, Upenn
115
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
assay_title!
DNase-seq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
333 results
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total RNA-seq
WGBS
primary cell
pancreatic alpha cell
42
31
monocyte
53
exocrine cell
39
pancreatic beta cell
11
16
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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