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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
1
ATAC-seq
DNase-seq
Assay category
38
DNA binding
1
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
13
transcription factor
10
narrow histone mark
2
RNA binding protein
Date released
21
August, 2017
15
November, 2017
2
October, 2019
1
March, 2019
Available data
431
bam
406
fastq
237
bigWig
199
tsv
183
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
42
bigBed narrowPeak
39
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
17
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
39
Homo sapiens
Biosample type
22
tissue
14
cell line
3
primary cell
Organ
14
liver
13
musculature of body
7
pancreas
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
39
AMP
Genome assembly (visualization)
115
hg19
GRCh38
Lab
38
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent control read length
assay_title!
DNase-seq
assembly!
GRCh38
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
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