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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
185
DNA binding
31
Transcription
20
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
92
November, 2017
40
May, 2022
34
August, 2017
32
May, 2020
31
August, 2021
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
144
bam
116
fastq
89
bigWig
69
bed narrowPeak
55
tagAlign
28
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
12
tsv
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
2
tar
1
csv
1
hdf5
1
vcf
Organism
252
Homo sapiens
Biosample type
126
cell line
122
tissue
3
primary cell
1
in vitro differentiated cells
Organ
311
pancreas
252
liver
228
epithelium
146
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
565
hg19
GRCh38
Lab
182
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent control run_type
assay_title!
DNase-seq
assembly!
GRCh38
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
110
9
2
2
2
1
tissue
liver
70
20
20
1
3
1
1
1
right lobe of liver
3
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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