Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
5
MeRIP-seq
Assay category
66
DNA binding
Target of assay
331
control
213
histone
213
histone modification
109
broad histone mark
104
narrow histone mark
66
transcription factor
14
RNA binding protein
5
nucleotide modification
2
chromatin remodeller
1
recombinant protein
Date released
40
November, 2017
12
May, 2021
11
August, 2021
5
November, 2020
1
April, 2019
1
August, 2017
1
November, 2018
Available data
48
bigWig
44
bed narrowPeak
42
bam
42
fastq
33
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
3
tar
Organism
71
Homo sapiens
Biosample type
55
cell line
12
in vitro differentiated cells
3
tissue
1
primary cell
Organ
52
liver
5
pancreas
3
epithelium
1
kidney
Project
71
AMP
Genome assembly (visualization)
487
hg19
GRCh38
Lab
43
AMP-T2D consortium
12
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
assay_title!
DNase-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
71 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
52
EndoC_BH1
3
in vitro differentiated cells
embryonic stem cell
12
tissue
islet of Langerhans
2
kidney
1
primary cell
skeletal muscle myoblast
1
Download