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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
7
single cell RNA-seq
4
ChIP-seq
1
ATAC-seq
Assay category
7
Transcription
4
DNA binding
1
DNA accessibility
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
Date released
84
February, 2021
6
July, 2018
4
December, 2017
1
February, 2023
1
June, 2018
Available data
208
bam
188
bigWig
150
tsv
85
txt
59
bed narrowPeak
20
bigBed narrowPeak
11
fastq
7
bedpe bed3+
5
hic
3
tagAlign
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
96
Homo sapiens
Biosample type
84
tissue
7
primary cell
5
in vitro differentiated cells
Organ
84
bone element
5
epithelium
5
pancreas
4
embryo
Project
96
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
95
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
96
inconsistent ontology term
33
audit script error
28
inconsistent control
Audit category:
1
inconsistent control read length
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
96 results
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RNA microarray
single cell RNA-seq
ChIP-seq
ATAC-seq
tissue
bone element
84
primary cell
co-expressing pancreatic endocrine cell
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
neuron cell of Hypothalamus (neuron)
1
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