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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
10
ATAC-seq
7
single cell RNA-seq
4
total RNA-seq
DNase-seq
2
RRBS
1
pCHi-C
Assay category
25
DNA binding
11
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
22
June, 2019
8
May, 2020
6
February, 2023
6
July, 2018
3
May, 2019
2
July, 2019
October, 2019
1
June, 2018
1
May, 2021
Available data
40
bam
35
bigWig
20
bed narrowPeak
20
bigBed narrowPeak
17
tsv
7
fastq
2
bed bedMethyl
2
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
109
in vitro differentiated cells
88
tissue
79
cell line
49
primary cell
1
stem cell
Organ
12
connective tissue
8
epithelium
8
musculature of body
7
kidney
5
heart
5
pancreas
Project
44
AMP
5
T1D
Genome assembly (visualization)
37
hg19
31
GRCh38
Lab
44
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
30
audit script error
assay_title!
DNase-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RRBS
pCHi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
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