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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
42
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
121
Transcription
82
DNA accessibility
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
October, 2019
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
3
June, 2019
Available data
97
bed narrowPeak
64
xls
62
txt
51
bam
41
bigWig
25
bigBed narrowPeak
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
255
Homo sapiens
Biosample type
231
tissue
24
primary cell
cell line
Organ
847
pancreas
675
connective tissue
489
adipose tissue
427
epithelium
384
liver
257
heart
255
kidney
254
brain
159
bone element
159
vasculature
155
blood vessel
86
limb
71
artery
63
musculature of body
57
eye
41
nerve
29
embryo
24
spleen
20
lung
20
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
208
AMP
47
KPMP
Genome assembly (visualization)
115
GRCh38
46
hg19
Lab
142
Katalin Susztak, Upenn
66
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
7
inconsistent ontology term
assay_title!
DNase-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
255 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
64
49
27
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
epithelial cell of proximal tubule
1
10
1
kidney epithelial cell
1
5
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
kidney glomerular epithelial cell
1
+ See 1 more…
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