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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
DNase-seq
Assay category
198
DNA binding
136
Transcription
42
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
67
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
December, 2019
1
August, 2018
Available data
290
bam
258
bigWig
140
fastq
131
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
391
Homo sapiens
Biosample type
2556
tissue
1052
primary cell
660
cell line
391
in vitro differentiated cells
10
stem cell
Organ
96
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
391
AMP
Genome assembly (visualization)
296
hg19
264
GRCh38
4
hg18
Lab
337
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
DNase-seq
month_released!
December, 2019
BIOSAMPLE
ASSAY
391 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
in vitro differentiated cells
adipocyte
67
5
8
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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