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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
16
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA accessibility
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
3
control
Date released
17
October, 2019
4
July, 2019
1
March, 2020
1
November, 2017
Available data
23
bam
20
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
bed broadPeak
4
bigBed broadPeak
3
fastq
2
bed bed3+
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
23
Homo sapiens
Biosample type
128
tissue
66
cell line
23
primary cell
Organ
382
epithelium
346
pancreas
33
connective tissue
25
vasculature
24
kidney
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
23
AMP
Genome assembly (visualization)
18
hg19
12
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
15
2
1
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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