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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
23
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
19
October, 2019
6
November, 2017
5
July, 2019
1
March, 2020
Available data
26
bam
23
bigWig
15
bed narrowPeak
15
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
6
fastq
2
bed bed3+
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
31
Homo sapiens
Biosample type
128
tissue
66
cell line
31
primary cell
Organ
388
epithelium
346
pancreas
33
connective tissue
31
vasculature
27
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
31
AMP
Genome assembly (visualization)
26
hg19
16
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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