Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
10
WGBS
6
total RNA-seq
2
ATAC-seq
Assay category
65
DNA binding
10
DNA methylation
6
Transcription
2
DNA accessibility
Target of assay
64
control
1
broad histone mark
1
histone
1
histone modification
Date released
27
October, 2018
15
August, 2017
12
December, 2017
9
November, 2018
6
May, 2022
4
December, 2018
4
October, 2017
4
September, 2017
1
January, 2019
1
March, 2019
Available data
243
bam
191
bed narrowPeak
158
tsv
156
txt
133
tagAlign
109
bigWig
83
fastq
64
xls
52
bigBed narrowPeak
16
bed bedMethyl
16
bigBed bedMethyl
6
csv
1
bed broadPeak
1
bedpe bed3+
Organism
82
Homo sapiens
Biosample type
183
primary cell
83
tissue
60
cell line
23
in vitro differentiated cells
1
stem cell
Organ
27
pancreas
22
adipose tissue
22
connective tissue
20
liver
10
spleen
4
brain
Project
83
AMP
Genome assembly (visualization)
hg19
270
GRCh38
Lab
76
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
missing controlled_by
assay_title!
DNase-seq
assembly!
hg19
BIOSAMPLE
ASSAY
83 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
WGBS
total RNA-seq
ATAC-seq
tissue
liver
16
1
islet of Langerhans
5
6
1
body of pancreas
8
2
spleen
8
2
subcutaneous adipose tissue
10
omental fat pad
8
pancreas
3
2
adipose tissue
1
3
brain
3
right lobe of liver
3
cerebellum (Hemisphere)
1
See all biosamples
Download