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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
103
total RNA-seq
29
ATAC-seq
DNase-seq
10
WGBS
3
RRBS
2
FAIRE-seq
Assay category
220
DNA binding
103
Transcription
31
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
174
August, 2017
58
October, 2018
48
December, 2017
24
May, 2022
17
November, 2018
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1730
bam
1595
bigWig
1076
tsv
807
bed narrowPeak
384
bigBed narrowPeak
367
fastq
238
tagAlign
157
txt
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
360
Homo sapiens
Biosample type
427
cell line
408
primary cell
367
tissue
140
in vitro differentiated cells
4
stem cell
Organ
210
pancreas
80
liver
42
adipose tissue
42
connective tissue
23
spleen
10
brain
2
musculature of body
Project
367
AMP
Genome assembly (visualization)
284
hg19
270
GRCh38
Lab
341
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
files.file_type!
xls
BIOSAMPLE
ASSAY
367 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
103
20
1
liver
67
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
16
2
1
subcutaneous adipose tissue
12
1
omental fat pad
11
1
white adipose tissue
12
right lobe of liver
10
1
brain
9
adipose tissue
2
3
skeletal muscle tissue
2
cerebellum (Hemisphere)
1
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