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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
187
single cell RNA-seq
161
ATAC-seq
56
snATAC-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
431
Transcription
217
DNA accessibility
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Target of assay
35
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
147
May, 2020
134
May, 2022
88
February, 2023
79
May, 2021
59
September, 2020
48
July, 2018
47
February, 2021
43
April, 2018
31
July, 2019
27
September, 2018
26
August, 2017
11
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
579
bigWig
575
bam
408
fastq
bed narrowPeak
265
tsv
153
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
786
Homo sapiens
Biosample type
1789
tissue
786
primary cell
260
in vitro differentiated cells
258
cell line
8
stem cell
Organ
293
epithelium
278
pancreas
22
connective tissue
16
vasculature
14
blood vessel
12
kidney
10
brain
9
vein
8
blood
8
bodily fluid
7
heart
5
musculature of body
3
liver
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
341
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
335
hg19
270
GRCh38
Lab
336
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
29
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
files.file_type!
bed narrowPeak
month_released!
December, 2019
BIOSAMPLE
ASSAY
786 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
29
6
31
1
pancreatic beta cell
21
12
16
6
16
1
monocyte
54
2
1
1
1
exocrine cell
39
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