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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
164
DNA binding
7
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
106
transcription factor
31
histone
31
histone modification
27
control
25
RNA binding protein
16
narrow histone mark
16
recombinant protein
15
broad histone mark
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
406
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
301
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
52
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
173
fastq
172
bam
143
bigWig
136
bed narrowPeak
114
bigBed narrowPeak
15
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
173
Homo sapiens
Biosample type
65
tissue
61
cell line
43
in vitro differentiated cells
3
stem cell
1
primary cell
Organ
113
liver
19
epithelium
15
blood
15
bodily fluid
13
embryo
8
spleen
5
pancreas
Project
173
AMP
Genome assembly (visualization)
147
GRCh38
139
hg19
Lab
173
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
assay_title!
DNase-seq
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
173 results
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Clear Filters
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
liver
42
right lobe of liver
10
spleen
6
2
pancreas
2
1
body of pancreas
2
cell line
HepG2
45
1
GM12878
15
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
primary cell
pancreatic cell
1
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