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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
22
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
22
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
4
August, 2017
3
February, 2021
3
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
1
November, 2018
Available data
185
bigWig
174
tsv
166
bam
23
bed narrowPeak
10
fastq
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
bigBed narrowPeak
1
csv
1
hdf5
1
vcf
Organism
232
Homo sapiens
Biosample type
201
tissue
23
cell line
8
primary cell
Organ
696
pancreas
518
connective tissue
414
adipose tissue
353
epithelium
232
liver
229
heart
220
kidney
159
bone element
122
vasculature
121
blood vessel
103
artery
52
eye
35
brain
24
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
232
AMP
Genome assembly (visualization)
190
hg19
165
GRCh38
Lab
179
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
DNase-seq
ChIP-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
232 results
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total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
3
1
1
1
1
1
right lobe of liver
3
1
2
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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