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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
Assay category
80
DNA binding
Target of assay
310
histone
310
histone modification
160
broad histone mark
156
control
149
narrow histone mark
80
transcription factor
13
RNA binding protein
8
recombinant protein
3
nucleotide modification
2
chromatin remodeller
Date released
22
August, 2017
16
May, 2021
11
August, 2021
9
December, 2017
8
November, 2017
7
October, 2019
5
February, 2021
1
November, 2018
1
November, 2019
Available data
403
bigWig
396
bam
394
bed narrowPeak
375
fastq
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
9
tagAlign
6
bed bed3+
3
tar
Organism
80
Homo sapiens
Biosample type
47
in vitro differentiated cells
33
cell line
tissue
Organ
22
connective tissue
20
liver
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
3
embryo
2
epithelium
2
pancreas
Project
80
AMP
Genome assembly (visualization)
63
hg19
48
GRCh38
Lab
57
AMP-T2D consortium
12
Kyle Gaulton, UCSD
11
Bing Ren, UCSD
Audit category:
11
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
DNase-seq
files.file_type!
bigBed narrowPeak
biosample_type!
tissue
BIOSAMPLE
ASSAY
80 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
+ See 3 more…
cell line
HepG2
20
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
+ See 2 more…
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