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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
19
RRBS
17
WGBS
2
ATAC-seq
Assay category
36
DNA methylation
29
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
10
narrow histone mark
4
transcription factor
Date released
26
August, 2017
23
July, 2019
7
November, 2017
7
November, 2018
2
October, 2019
1
March, 2019
1
October, 2017
Available data
3183
bam
2960
bigWig
1608
bed narrowPeak
1600
tsv
1346
fastq
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
67
Homo sapiens
Biosample type
48
tissue
12
primary cell
7
cell line
Organ
17
musculature of body
14
pancreas
9
liver
8
epithelium
8
heart
4
connective tissue
4
kidney
4
vasculature
3
adipose tissue
3
blood vessel
3
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
67
AMP
Genome assembly (visualization)
49
hg19
18
GRCh38
Lab
65
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
assay_title!
DNase-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ChIP-seq
RRBS
WGBS
ATAC-seq
tissue
skeletal muscle tissue
13
2
islet of Langerhans
6
1
2
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
+ See 13 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
cell line
HepG2
6
1
See all biosamples
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