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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
67
ChIP-seq
6
WGBS
3
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
67
DNA binding
6
DNA methylation
3
DNA accessibility
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
12
transcription factor
11
narrow histone mark
Date released
386
February, 2021
55
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
440
bam
423
bigWig
401
tsv
43
fastq
10
bed narrowPeak
bigBed narrowPeak
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
479
Homo sapiens
Biosample type
477
tissue
2
primary cell
1
in vitro differentiated cells
Organ
799
pancreas
642
connective tissue
480
adipose tissue
432
liver
394
epithelium
263
heart
248
kidney
158
brain
151
bone element
118
vasculature
116
blood vessel
81
artery
49
musculature of body
38
limb
37
embryo
24
eye
20
lung
17
nerve
15
blood
15
bodily fluid
12
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
480
AMP
Genome assembly (visualization)
415
GRCh38
415
hg19
Lab
480
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
DNase-seq
files.file_type!
bigBed narrowPeak
month_released!
February, 2023
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
1
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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