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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
124
DNA binding
13
Transcription
3
DNA accessibility
Target of assay
96
histone
96
histone modification
84
narrow histone mark
28
control
12
broad histone mark
Date released
86
October, 2019
28
November, 2017
July, 2019
12
February, 2020
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
198
bam
174
bigWig
170
bed narrowPeak
118
tagAlign
bigBed narrowPeak
19
fastq
15
bed broadPeak
15
tsv
6
bigBed broadPeak
1
bed bed3
1
tagAlign bed3+
Organism
142
Homo sapiens
Biosample type
139
tissue
3
primary cell
Organ
849
pancreas
638
connective tissue
469
adipose tissue
433
epithelium
422
liver
274
heart
238
kidney
159
bone element
142
brain
141
vasculature
140
blood vessel
113
artery
54
eye
39
musculature of body
37
embryo
33
limb
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
83
hg19
79
GRCh38
Lab
142
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
DNase-seq
files.file_type!
bigBed narrowPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
14
1
1
cingulate gyrus
8
layer of hippocampus
7
substantia nigra
5
1
cerebellum (Hemisphere)
3
1
1
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primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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