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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
168
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
DNase-seq
29
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
198
DNA accessibility
188
Transcription
185
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
31
July, 2019
31
June, 2019
30
October, 2019
18
September, 2020
12
February, 2023
8
January, 2021
5
April, 2018
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
February, 2021
3
October, 2022
1
March, 2020
1
March, 2023
Available data
584
bigWig
580
bam
fastq
270
tsv
266
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
649
Homo sapiens
Biosample type
2232
tissue
649
primary cell
253
in vitro differentiated cells
233
cell line
6
stem cell
Organ
150
epithelium
88
pancreas
30
connective tissue
25
vasculature
24
blood vessel
24
kidney
20
vein
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
7
brain
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
289
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
381
hg19
280
GRCh38
Lab
254
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
4
audit script error
assay_title!
DNase-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
649 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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